HPC Quick Reference Guide
Remember to substitute the usernames, login nodes, file names, ...for
your own.
| Login |
|
| Login |
ssh vsc40000@login.hpc.ugent.be |
| Where am I? |
hostname |
| Copy to HPC |
scp foo.txt vsc40000@login.hpc.ugent.be: |
| Copy from HPC |
scp vsc40000@login.hpc.ugent.be:foo.txt |
| Setup ftp session |
sftp vsc40000@login.hpc.ugent.be |
| Modules |
|
| List all available modules |
Module avail |
| List loaded modules |
module list |
| Load module |
module load example |
| Unload module |
module unload example |
| Unload all modules |
module purge |
| Help on use of module |
module help |
| Command |
Description |
qsub script.pbs |
Submit job with job script script.pbs |
qstat 12345 |
Status of job with ID 12345 |
qstat -n 12345 |
Show compute node of job with ID 12345 |
qdel 12345 |
Delete job with ID 12345 |
qstat |
Status of all your jobs |
qstat -na |
Detailed status of your jobs + a list of nodes they are running on |
qsub -I |
Submit Interactive job |
| Worker Framework |
|
| Load worker module |
module load worker/1.6.13-iimpi-2023a Don't forget to specify a version. To list available versions, use module avail worker/ |
| Submit parameter sweep |
wsub -batch weather.pbs -data data.csv |
| Submit job array |
wsub -t 1-100 -batch test_set.pbs |
| Submit job array with prolog and epilog |
wsub -prolog pre.sh -batch test_set.pbs -epilog post.sh -t 1-100 |